Klonopin not as effective after eating?

[tovictory]

Ive recently (~1month) started back on Atkins diet. It was very helpful and I was very successful about 5 years ago. I lost about 60lbs in 5 months. 
Fast forward to now, late 20s, have a 2yr old. 
Some days I will not eat normally, knowing its a particulary stressful day because it seems my Klonopin doesnt "work" as well or even at all! I often think maybe its my high fat diet. Is this all in my head?